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Allegheny A, Allegheny B
- Main Line (Harrisburg and Buffalo) WNY&P (PRR) 1866-1872, PRR 1852-1873
- Main Line (Philadelphia and Pittsburgh) PRR 1847-1852
- Avis Branch BC (NYC) 1884, BCE (NYC) 1902
- Bald Eagle Branch PRR 1856-1865
- Bear Run Branch PRR 1911-1912
- Beaver Secondary PRR 1896-1898
- Bedford Secondary PRR 1870-1910
- Bellefonte Secondary PRR 1859-1885
- Bens Creek Branch PRR 1887-1907
- Bigler Industrial Track PRR 1867-1869
- Black Lick Secondary PRR 1859-1904
- Boardman Industrial Track BCE (NYC) 1903
- Brookville Industrial Track PRR 1895
- Central Secondary PRR 1914
- Chautauqua Secondary WNY&P (PRR) 1862-1867
- Cherry Tree Secondary BCE (NYC) 1904, BC (NYC) 1892, BCE (NYC) 1896-1905
- Clermont Industrial Track WNY&P (PRR) 1874-1875
- Corning Secondary NYC 1840-1883
- Corry Secondary PRR 1859
- Cresson Secondary PRR 1859-1892
- CT&D Secondary CT&D (NYC/PRR) 1904-1906
- Dunkirk Industrial Track NYC 1871
- East Brady Track PRR 1866-1868
- Elkland Industrial Track NYC 1873
- Elmira Secondary E&W (PRR) 1834-1854
- Emporium Secondary PRR 1859-1864
- Erie Secondary PRR 1859
- Eureka No. 37 Branch PRR 1900
- Farmers Valley Industrial Track PS&N !!
- Glen Campbell Branch PRR 1889-1890
- Grampian Industrial Track PRR 1874-1892
- Grass Flat Industrial Track BC (NYC) N/A
- Hillman Branch PRR 1907-1908
- Holliday Branch PRR 1850
- Holliday Secondary PRR 1873-1892
- Hooverhurst Industrial Track BCE (NYC) 1897
- Irvona Branch PRR 1883-1886
- Johnstown Branch PRR 1896
- Keating Connecting Branch BCE (NYC) N/A
- La Jose Branch PRR 1887-1888
- Lilly Branch PRR 1887-1892
- Loop Cut-Off Track CT&D (NYC/PRR) 1910
- Low Grade Secondary PRR 1871-1874
- Madera Industrial Track BC (NYC) 1885, BCE (NYC) 1903-1905
- Mahaffey Industrial Track ? (Allegheny B)
- Maitland Industrial Track PRR 1867-1871
- Manver Industrial Track CT&D (NYC/PRR) 1905
- Mapleton Track PRR 1870
- Martinsburg Branch PRR 1871
- McGee's Branch PRR 1890
- Mill Hall Industrial Track BC (NYC) 1884
- Mills Industrial Track PRR 1856-1869
- Millville Track PRR 1886-1887
- Milroy Secondary PRR 1863-1865
- Morrison's Cove Secondary PRR 1871
- Moshannon Industrial Track PRR 1864-1887
- Moshannon and Clearfield Industrial Track PRR 1880-1893
- Moss Creek Branch PRR 1902
- Mt. Dallas Secondary PRR 1870-1872
- Muddy Run Industrial Track PRR 1890-1895
- New Portage Secondary PRR 1868-1903
- Oil City Industrial Track WNY&P (PRR) 1865-1866
- Oil City Secondary PRR 1866-1870
- Paint Creek Branch PRR 1898
- Patton No. 2 Branch PRR 1893
- Penn Yan Industrial Track NYC 1885
- Pete Secondary PRR 1901
- Phillipsburg Industrial Track BC (NYC) N/A
- Rexis Branch PRR 1916
- Ridgway Industrial Track PRR 1882-1885
- Sample Run Industrial Track CT&D (NYC/PRR) 1906
- Seneca Industrial Track E&LO (PRR) 1852-1873
- Shanktown Industrial Track CT&D (NYC/PRR) 1904
- Sligo Industrial Track PRR 1874
- Snow Shoe Secondary BC (NYC) 1884-1885
- Sonman Branch PRR 1893-1904
- South Fork Secondary PRR 1891-1898
- Sterling Branch PRR 1893
- Summerhill Branch PRR N/A
- Susquehanna Secondary PRR 1892-1893
- Titus Secondary WNY&P (PRR) 1862-1871
- Valley Branch NYC 1871
- Walnut Run Branch PRR 1892
- Warren Industrial Track NYC 1871
- Watkins Glen Secondary E&LO (PRR) 1849-1851
- Watsontown Secondary PRR 1886-1903
- Wellsboro Industrial Track NYC 1872
- West Branch Valley Secondary BCE (NYC) 1884-1902
- Williamsport Branch PRR 1862-1864
- Winburne Industrial Track BC (NYC) N/A
- Windber Industrial Track PRR 1907-1908