User:DKEdwards005/sandbox genome
From: https://www.ncbi.nlm.nih.gov/genome/browse/#!/eukaryotes/. Filtering must include "exclude partial" and "exclude anomalous".
If no publication date, then included when submitted to BioProject.
Ignore mitochondrial genome publications, etc., that doesn't include the full sequences. Includes This is a first draft reference genome.
Amphibians
Organism name | Strain | Assembly level | Genome size (Mb) | Number of predicted genes | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
Xenopus tropicalis | Nigerian | Chromosome | 1,440.4 | 26,496 | DOE Joint Genome Institute | GCA_000004195.3 | 2010[1] |
Xenopus laevis | J | Chromosome | 2,718.43 | 36,776 | International Xenopus Sequencing Consortium | GCA_001663975.1 | 2016[2] |
Ambystoma mexicanum | DD151 | Scaffold | 32,393.6 | 0 (NA) | Max Planck Society | GCA_002915635.1 | 2018[3] |
Rana catesbeiana | Scaffold | 6,250.35 | 22,238 | BC Cancer Agency | GCA_002284835.2 | 2017[4] | |
Nanorana parkeri | Scaffold | 2,053.87 | 21,171 | BGI-Shenzhen | GCA_000935625.1 | 2015[5] |
Reptiles
Organism name | Strain | Assembly level | Genome size (Mb) | Genes (from NCBI Genome) | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
Alligator mississippiensis | Scaffold | 2156.98 | 25,012 | International Crocodilian Genomes Working Group | GCA_000281125.4 | 2012[6]; additional work by Dovetail Genomics in 2017[7] | |
Alligator sinensis | Scaffold | 2270.57 | 22,098 | BGI-shenzhen | GCA_000455745.1 | 2013[8] | |
Anolis carolinensis | Chromosome | 1799.14 | 22,092 | Broad Institute | GCA_000090745.2 | 2011[9] | |
Apalone spinifera | Scaffold | 1931.08 | NA | WUGSC | GCA_000385615.1 | Submitted 2013[10] | |
Chelonia mydas | Scaffold | 2208.41 | 19,323 | BGI | GCA_000344595.1 | 2013[11] | |
Chrysemys picta bellii | Chromosome | 2365.77 | 24,356 | Painted turtle genome sequencing consortium | GCA_000241765.2 | 2013[12] | |
Crocodylus porosus | Scaffold | 2049.54 | 19,551 | Mississippi State University | GCA_001723895.1 | Described in 2012[13]; Published in 2014[14] | |
Crocodylus porosus | Scaffold | 2120.57 | NA | The International Crocodilian Genomes Working Group | GCA_000768395.1 | [NEED TO RESOLVE] | |
Crotalus horridus | Scaffold | 1520.33 | NA | Timber Rattlesnake Genome | GCA_001625485.1 | Submitted 2016[15] | |
Crotalus pyrrhus | Scaffold | 1126.79 | NA | Reed College | GCA_000737285.1 | 2014[16] | |
Gekko japonicus | Scaffold | 2490.27 | 21,426 | Nantong University | GCA_001447785.1 | 2016[17] | |
Gopherus agassizii | Scaffold | 2184.97 | 20,172[18] | Arizona State University | GCA_002896415.1 | 2017[19] | |
Malaclemys terrapin terrapin | Contig | 2439.75 | 13 | University of Maryland | GCA_001728815.2 | Submitted 2016[20] | |
Ophiophagus hannah | Scaffold | 1594.07 | 18,558 | Naturalis Biodiversity Center | GCA_000516915.1 | 2013[21] | |
Pantherophis guttatus | Scaffold | 1404.22 | NA | University of Geneva | GCA_001185365.1 | 2014[22] | |
Pelodiscus sinensis | Scaffold | 2202.48 | 21,622 | P. sinensis genome project consortium | GCA_000230535.1 | 2014[23] | |
Pogona vitticeps | Scaffold | 1716.68 | 21,747 | BRAEMBL | GCA_900067755.1 | 2015[24] | |
Protobothrops mucrosquamatus | Scaffold | 1673.88 | 21,073 | Okinawa Institute of Science and Technology | GCA_001527695.3 | 2013[25]; 2017[26] | |
Python bivittatus | Scaffold | 1435.05 | 19,862 | The Consortium for Comparative Genomics, UC Denver, Washington University | GCA_000186305.2 | Described in 2011[27]; Submitted 2013[28] | |
Terrapene mexicana triunguis | Scaffold | 2323.11 | NA | Saint Louis Zoo Box Turtle Project | GCA_002925995.1 | Submitted 2018[29] | |
Thamnophis sirtalis | Scaffold | 1424.9 | 20,101 | The Genome Institute at Washington University School of Medicine (WUGSC) | GCA_001077635.2 | 2014[30] | |
Vipera berus berus | Scaffold | 1532.39 | NA | BCM-HGSC | GCA_000800605.1 | Submitted 2014[31] |
Fishes
Organism name | Strain | Assembly level | Genome size (Mb) | Number of predicted genes | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
Acanthochromis polyacanthus | Scaffold | 991.585 | 27009 | King Abdullah University of Science and technology | GCA_002109545.1 | Submitted 2017[32] | |
Amphilophus citrinellus | Scaffold | 844.903 | 0 | UNIVERSITY OF KONSTANZ | GCA_000751415.1 | Submitted 2014[33] | |
Amphiprion ocellaris | Scaffold | 880.721 | 26097 | Deakin University | GCA_002776465.1 | Submitted 2017[34] | |
Anguilla anguilla | Scaffold | 1018.7 | 0 | ZF-screens B.V. | GCA_000695075.1 | Submitted 2014[35] | |
Anguilla japonica | Scaffold | 1151.07 | 0 | GCA_002723815.1 | |||
Anguilla japonica | Scaffold | 1151.14 | 0 | GCA_000470695.1 | |||
Anguilla rostrata | Scaffold | 1413.03 | 0 | Universite Laval | GCA_001606085.1 | Submitted 2016[36] | |
Anoplopoma fimbria | Contig | 699.326 | 0 | University of Victoria | GCA_000499045.1 | 2013[37] | |
Astyanax mexicanus | Chromosome | 1335.24 | 30815 | Aquatic Genome Models (Washington University School of Medicine) | GCA_000372685.2 | 2014[38] | |
Austrofundulus limnaeus | Quisiro | Scaffold | 866.963 | 26706 | Center for Life in Extreme Environments at Portland State University, Portland, OR
- The Genome Institute - Washington University School of Medicine |
GCA_001266775.1 | Submitted 2015[39] |
Boleophthalmus pectinirostris | Scaffold | 955.752 | 22665 | BGI-shenzhen | GCA_000788275.1 | 2014[40] | |
Callorhinchus milii | Scaffold | 974.499 | 33094 | Institute of Molecular and Cell Biology, Singapore | GCA_000165045.2 | 2007[41]; 2014[42] | |
Clupea harengus | Scaffold | 807.712 | 25434 | BGI | GCA_000966335.1 | Submitted 2015[43] | |
Coryphaenoides rupestris | Scaffold | 829.209 | 0 | - Centre for Genomic Research
- Molecular Ecology Group, Department of Biosciences, Durham University |
GCA_002895965.1 | Submitted 2018[44] | |
Cottus rhenanus | Naaf | Scaffold | 563.609 | 0 | Cold Spring Harbor Laboratory | GCA_001455555.1 | Submitted 2015[45] |
Cynoglossus semilaevis | Chromosome | 470.199 | 24279 | Beijing Genomics Institute | GCA_000523025.1 | 2014[46] | |
Cyprinodon nevadensis pectoralis | Scaffold | 1011.85 | 0 | University of Colorado, Boulder | GCA_000776015.1 | Submitted 2014[47] | |
Cyprinodon variegatus | Scaffold | 1035.18 | 24878 | Aquatic Genome Models (Washington University School of Medicine) | GCA_000732505.1 | ||
Cyprinus carpio | Chromosome | 1713.66 | 66544 | GCA_000951615.2 | |||
Cyprinus carpio | Scaffold | 1380.1 | 50485 | GCA_001270105.1 | |||
Danio rerio | Tuebingen | Chromosome | 1679.2 | 46998 | GCA_000002035.4 | ||
Danio rerio | Tuebingen | Scaffold | 1411.76 | 0 | GCA_000767325.1 | ||
Danio rerio | Tuebingen | Scaffold | 1442.82 | 0 | GCA_001487895.1 | ||
Danio rerio | CG2 | Scaffold | 1228.67 | 0 | GCA_001483285.1 | ||
Dicentrarchus labrax | Scaffold | 675.917 | 0 | Max Planck Institute for Plant Breeding Research | GCA_000689215.1 | 2014[48] | |
Eptatretus burgeri | Scaffold | 2608.38 | 0 | RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY | GCA_900186335.2 | Submitted 2017[49] | |
Esox lucius | Chromosome | 904.497 | 26881 | University of Victoria | GCA_000721915.3 | 2014[50] | |
Fundulus heteroclitus | Scaffold | 1021.9 | 25849 | The Genome Institute at Washington University School of Medicine | GCA_000826765.1 | Submitted 2015[51] | |
Gadus morhua | Scaffold | 824.311 | 0 | Genofisk (Norwegian High-Throughput Sequencing Centre, University of Oslo) | GCA_000231765.1 | 2011[52] | |
Gasterosteus aculeatus | Contig | 446.611 | 0 | Broad Institute | GCA_000180675.1 | Submitted 2006[53] | |
Haplochromis burtoni | Scaffold | 831.412 | 26625 | Broad Institute | GCA_000239415.1 | 2014[54] | |
Hippocampus comes | Scaffold | 493.776 | 25471 | South China Sea Institute of Oceanology, Chinese Academy of Sciences | GCA_001891065.1 | 2016[55] | |
Ictalurus punctatus | Chromosome | 783.275 | 27156 | Auburn University | GCA_001660625.1 | 2016[56] | |
Kryptolebias marmoratus | Scaffold | 680.367 | 23485 | GCA_001649575.1 | |||
Kryptolebias marmoratus | RHL | Scaffold | 653.96 | 0 | GCA_001663955.1 | ||
Labeotropheus fuelleborni | Domwe Island | Scaffold | 70.8584 | 0 | GCA_000150875.1 | ||
Labrus bergylta | Scaffold | 805.481 | 28378 | The National Institute of Nutrition and Seafood Research | GCA_900080235.1 | Submitted 2016[57] | |
Larimichthys crocea | Scaffold | 678.938 | 27103 | GCA_000972845.1 | |||
Larimichthys crocea | Scaffold | 648.407 | 0 | GCA_000742935.1 | |||
Lates calcarifer | Scaffold | 668.481 | 30224 | GCA_001640805.1 | |||
Lates calcarifer | Contig | 605.008 | 0 | GCA_900066045.1 | |||
Lates calcarifer | Scaffold | 589.095 | 0 | GCA_001010145.1 | |||
Lates calcarifer | Scaffold | 668.465 | 0 | GCA_900066035.1 | |||
Latimeria chalumnae | Scaffold | 2860.59 | 26117 | GCA_000225785.1 | |||
Latimeria chalumnae | Scaffold | 2736.33 | 0 | GCA_000325985.2 | |||
Lepisosteus oculatus | Chromosome | 945.878 | 21770 | Broad Institute | GCA_000242695.1 | Submitted 2011[58] | |
Lethenteron camtschaticum | Scaffold | 1030.66 | 0 | Institute of Molecular and Cell Biology | GCA_000466285.1 | Submitted 2013[59] | |
Leuciscus waleckii | Scaffold | 752.539 | 0 | Chinese Academy of Fishery Sciences | GCA_900092035.1 | Submitted 2016[60] | |
Leucoraja erinacea | Contig | 1555.46 | 13 | North East Cyberinfrastructure Consortium (Mount Desert Island Biological Laboratory) | GCA_000238235.1 | ||
Maccullochella peelii | Scaffold | 633.241 | 0 | Monash University Malaysia | GCA_002120245.1 | Submitted 2017[61] | |
Maylandia zebra | Scaffold | 859.842 | 27143 | Broad Institute, University of Maryland | GCA_000238955.3 | 2014[62]; 2015[63] | |
Mchenga conophoros | Otter Point | Scaffold | 73.4256 | 0 | Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) | GCA_000150855.1 | 2008[64] |
Melanochromis auratus | Domwe Island | Scaffold | 68.2386 | 0 | Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) | GCA_000150895.1 | 2008[64] |
Micropterus floridanus | Contig | 1001.52 | 0 | Auburn University | GCA_002592385.1 | Submitted 2017[65] | |
Miichthys miiuy | Scaffold | 619.301 | 0 | Zhejiang Ocean University | GCA_001593715.1 | 2016[66] | |
Mola mola | Scaffold | 639.452 | 0 | BGI-shenzhen | GCA_001698575.1 | Submitted 2016[67] | |
Monopterus albus | Scaffold | 684.144 | 23830 | Wuhan University | GCA_001952655.1 | Submitted 2017 | |
Morone saxatilis | Scaffold | 585.167 | 0 | Striped Bass Genomics (North Carolina State University) | GCA_001663605.1 | Submitted 2016[68] | |
Neolamprologus brichardi | Scaffold | 847.91 | 25031 | Broad Institute | GCA_000239395.1 | 2014[69] | |
Nothobranchius furzeri | GRZ | Chromosome | 1242.52 | 25026 | GCA_001465895.2 | ||
Nothobranchius furzeri | Scaffold | 1022.97 | 0 | GCA_000878545.1 | |||
Notothenia coriiceps | Scaffold | 636.614 | 26863 | Antarctic Fish Genome Project (DNA Link, Inc., Korea Polar Research Institute) | GCA_000735185.1 | 2014[70] | |
Oncorhynchus kisutch | Chromosome | 2369.93 | 44786 | University of Victoria | GCA_002021735.1 | Submitted 2016[71] | |
Oncorhynchus mykiss | Chromosome | 2179 | 51000 | GCA_002163495.1 | |||
Oncorhynchus mykiss | Chromosome | 1877.56 | 46585 | GCA_900005705.1 | |||
Oncorhynchus tshawytscha | Chromosome | 2425.7 | 0 | GCA_002872995.1 | |||
Oncorhynchus tshawytscha | Chromosome | 2362.28 | 0 | GCA_002831465.1 | |||
Oreochromis niloticus | Chromosome | 1009.86 | 37427 | GCA_001858045.2 | |||
Oreochromis niloticus | Chromosome | 927.696 | 0 | GCA_000188235.2 | |||
Oryzias latipes | Hd-rR | Chromosome | 734.057 | 13 | GCA_002234675.1 | ||
Oryzias latipes | HSOK | Chromosome | 744.414 | 0 | GCA_002234695.1 | ||
Oryzias latipes | HNI | Chromosome | 677.633 | 0 | GCA_002234715.1 | ||
Oryzias latipes | Hd-rR | Chromosome | 869.818 | 0 | GCA_000313675.1 | ||
Oryzias latipes | HNI | Scaffold | 662.701 | 0 | GCA_000151825.1 | ||
Oryzias melastigma | HK-1 | Scaffold | 779.453 | 0 | Sungkyunkwan University | GCA_002922805.1 | Submitted 2018[72] |
Pagrus major | Scaffold | 875.465 | 0 | Center for Marine Environmental Studies, Ehime University | GCA_002897255.1 | 2017[73] | |
Pampus argenteus | Scaffold | 350.449 | 0 | Kuwait Institute for Scientific Research (KISR) | GCA_000697985.1 | 2016[74] | |
Paralichthys olivaceus | Scaffold | 643.911 | 24567 | GCA_001970005.2 | |||
Paralichthys olivaceus | Chromosome | 545.775 | 0 | GCA_001904815.2 | |||
Paramormyrops kingsleyae | Scaffold | 799.421 | 0 | Michigan State University | GCA_002872115.1 | 2017[75] | |
Periophthalmodon schlosseri | Scaffold | 679.761 | 0 | BGI-Shenzhen | GCA_000787095.1 | 2014[76] | |
Periophthalmus magnuspinnatus | Scaffold | 701.697 | 0 | BGI-shenzhen | GCA_000787105.1 | 2014[76] | |
Petromyzon marinus | Scaffold | 1130.42 | 0 | GCA_002833325.1 | |||
Petromyzon marinus | Scaffold | 885.535 | 0 | GCA_000148955.1 | |||
Pimephales promelas | Scaffold | 1219.33 | 0 | GCA_000700825.1 | |||
Pimephales promelas | Scaffold | 957.81 | 0 | GCA_000700965.1 | |||
Poecilia formosa | Scaffold | 748.923 | 31585 | Aquatic Genome Models (Washington University School of Medicine) | GCA_000485575.1 | Submitted 2013[77] | |
Poecilia latipinna | Scaffold | 815.145 | 30571 | The Genome Institute at Washington University School of Medicine (WUGSC) | GCA_001443285.1 | Submitted 2015[78] | |
Poecilia mexicana | Scaffold | 801.711 | 30746 | The Genome Institute at Washington University School of Medicine (WUGSC) | GCA_001443325.1 | Submitted 2015[79] | |
Poecilia reticulata | Guanapo | Chromosome | 731.622 | 26373 | Max Planck Institute for Developmental Biology | GCA_000633615.2 | 2015[80] |
Pseudopleuronectes yokohamae | Contig | 547.831 | 0 | Tohoku university | GCA_000787555.1 | 2015[81] | |
Pundamilia nyererei | Scaffold | 830.133 | 24446 | Broad Institute | GCA_000239375.1 | 2014[82] | |
Pygocentrus nattereri | Scaffold | 1285.35 | 28178 | McDonnell Genome Institute - Washington University School of Medicine | GCA_001682695.1 | Submitted 2016[83] | |
Rhamphochromis esox | Otter Point | Scaffold | 71.2951 | 0 | Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) | GCA_000150935.1 | 2008[64] |
Rhincodon typus | Scaffold | 2931.6 | 24529 | University of Victoria | GCA_001642345.2 | Submitted 2018[84] | |
Salmo salar | Chromosome | 2966.89 | 59213 | International Cooperation to Sequence the Atlantic Salmon Genome | GCA_000233375.4 | ||
Salvelinus alpinus | Chromosome | 1516.05 | 33552 | GCA_002910315.1 | |||
Scartelaos histophorus | Scaffold | 695.009 | 0 | BGI-shenzhen | GCA_000787155.1 | 2014[85] | |
Scleropages formosus | Scaffold | 777.359 | 24709 | GCA_001624265.1 | |||
Scleropages formosus | Scaffold | 746.544 | 0 | GCA_001624245.1 | |||
Scleropages formosus | Scaffold | 738.407 | 0 | GCA_001624255.1 | |||
Scleropages formosus | Scaffold | 708.403 | 24736 | GCA_001005745.2 | |||
Sebastes aleutianus | Scaffold | 899.65 | 0 | USC | GCA_001910805.2 | Submitted 2016[86] | |
Sebastes minor | Scaffold | 681.653 | 0 | USC | GCA_001910765.2 | Submitted 2016[87] | |
Sebastes nigrocinctus | Scaffold | 746.045 | 0 | USC | GCA_000475235.3 | Submitted 2013[88] | |
Sebastes rubrivinctus | Scaffold | 756.297 | 0 | University of Southern California | GCA_000475215.1 | Submitted 2013[89] | |
Sebastes steindachneri | Scaffold | 648.011 | 0 | USC | GCA_001910785.2 | Submitted 2016[90] | |
Seriola dumerili | Scaffold | 677.686 | 24086 | Genomic breeding group, Research Center for Aquatic Breeding, National Research Institute of aquaculture, FRA | GCA_002260705.1 | Submitted 2017[91] | |
Seriola lalandi dorsalis | Scaffold | 732.51 | 28255 | Iowa State University | GCA_002814215.1 | Submitted 2017[92] | |
Seriola quinqueradiata | Scaffold | 639.27 | 0 | GCA_002217815.1 | |||
Seriola quinqueradiata | Scaffold | 861.629 | 0 | GCA_002207885.1 | |||
Sinocyclocheilus anshuiensis | Scaffold | 1632.72 | 50985 | BGI, Shenzhen | GCA_001515605.1 | 2016[93] | |
Sinocyclocheilus grahami | Scaffold | 1750.29 | 54207 | BGI, Shenzhen | GCA_001515645.1 | 2016[93] | |
Sinocyclocheilus rhinocerous | Scaffold | 1655.79 | 52111 | BGI, Shenzhen | GCA_001515625.1 | 2016[93] | |
Stegastes partitus | Scaffold | 800.492 | 24580 | Aquatic Genome Models (Washington University School of Medicine) | GCA_000690725.1 | Submitted 2014[94] | |
Symphodus melops | Contig | 614.569 | 0 | University of Agder | GCA_002819105.1 | Submitted 2016[95] | |
Takifugu flavidus | Scaffold | 378.032 | 0 | IOCAS | GCA_000400755.1 | 2014[96] | |
Takifugu rubripes | Chromosome | 391.485 | 23164 | The Fugu Genome Sequencing Consortium (Institute of Molecular
and Cell Biology, Singapore; DOE Joint Genome Institute) |
GCA_000180615.2 | 2002[97]; 2011[98] | |
Tetraodon nigroviridis | Scaffold | 342.403 | 27918 | Genoscope | GCA_000180735.1 | 2014[99] | |
Thunnus orientalis | Contig | 684.497 | 0 | National Research Institute of Fisheries Science | GCA_000418415.1 | 2013[100] | |
Xiphophorus couchianus | Scaffold | 708.396 | 0 | McDonnell Genome Institute - Washington University School of Medicine | GCA_001444195.1 | 2016[101] | |
Xiphophorus hellerii | Sarabia | Scaffold | 733.802 | 0 | McDonnell Genome Institute - Washington University School of Medicine
**these two seem to be mistaken: These two institutes didn't publish anything on those species, instead, they published on the Maculatus and I don't know why they're listed here** |
GCA_001443345.1 | 2016[101] |
Xiphophorus maculatus | JP 163 A | Chromosome | 704.321 | 27213 | GCA_002775205.2 | ||
Xiphophorus maculatus | JP 163 A | Scaffold | 729.664 | 0 | GCA_000241075.1 |
Birds
Organism name | Strain | Assembly level | Genome size (Mb) | Number of predicted genes | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
Acanthisitta chloris | Scaffold | 1035.88 | 15175 | BGI | GCA_000695815.1 | 2014[102] | |
Acridotheres javanicus | Scaffold | 1051.58 | 0 | National University of Singapore | GCA_002849675.1 | 2018[103] | |
Agapornis roseicollis | Scaffold | 1121.79 | 0 | North West University | GCA_002631895.1 | 2017[104] | |
Amazona aestiva | Scaffold | 1129.54 | 16307 | LNCC | GCA_001420675.1 | Submitted 2015[105] | |
Amazona vittata | Scaffold | 1175.4 | 0 | Puerto Rican Parrot Genome Project (University of Puerto Rico at Mayaguez) | GCA_000332375.1 | 2012[106] | |
Anas platyrhynchos | Scaffold | 1105.05 | 21727 | GCA_000355885.1 | |||
Anas platyrhynchos | Scaffold | 1265.07 | 0 | GCA_002224895.1 | |||
Anas platyrhynchos platyrhynchos | Chromosome | 1136.42 | 0 | China Agricultural University | GCA_002743455.1 | Submitted 2017[107] | |
Anas zonorhyncha | Scaffold | 1310.8 | 0 | BGI | GCA_002224875.1 | Submitted 2017[108] | |
Anser brachyrhynchus | PFG001 | Scaffold | 1116.99 | 0 | Aarhus University, Denmark | GCA_002592135.1 | 2018[109] |
Anser cygnoides | Scaffold | 1130.28 | 0 | Poultry Science Institute | GCA_002166845.1 | 2016[110] | |
Anser cygnoides domesticus | Scaffold | 1119.15 | 20800 | Anser cygnoides Genome consortium
- Institute of Zhejiang Academy of Agricultural sciences - Beijing Genomics Institute |
GCA_000971095.1 | 2015[111] | |
Antrostomus carolinensis | Scaffold | 1119.68 | 15541 | BGI | GCA_000700745.1 | 2014[102] | |
Apaloderma vittatum | Scaffold | 1070.84 | 14490 | BGI | GCA_000703405.1 | 2014[102] | |
Aptenodytes forsteri | Scaffold | 1254.35 | 15366 | BGI | GCA_000699145.1 | 2014[102] | |
Apteryx australis mantelli | Scaffold | 1523.97 | 18494 | MPI-EVA | GCA_001039765.1 | 2015[112] | |
Aquila chrysaetos canadensis | Scaffold | 1192.74 | 17520 | GCA_000766835.1 | |||
Aquila chrysaetos canadensis | Scaffold | 1548.48 | 0 | GCA_000696035.1 | |||
Ara macao | Scaffold | 1204.7 | 0 | GCA_000400695.1 | |||
Ara macao | Contig | 1035.92 | 0 | GCA_000400545.1 | |||
Balearica regulorum gibbericeps | Scaffold | 1127.62 | 15122 | BGI | GCA_000709895.1 | 2014[102] | |
Bambusicola thoracicus | Scaffold | 1032.3 | 17763 | University of Florida | GCA_002909625.1 | Submitted 2018[113] | |
Buceros rhinoceros silvestris | Scaffold | 1065.78 | 14483 | BGI | GCA_000710305.1 | 2014[102] | |
Calidris pugnax | Scaffold | 1229.09 | 18583 | GCA_001431845.1 | |||
Calidris pugnax | Scaffold | 1173.2 | 0 | GCA_001458055.1 | |||
Callipepla squamata | Texas | Scaffold | 1045.28 | 17131 | Texas A&M University | GCA_002218305.1 | 2017[114] |
Calypte anna | Scaffold | 1105.68 | 14812 | GCA_000699085.1 | |||
Calypte anna | Contig | 2021.12 | 0 | GCA_002021895.1 | |||
Cariama cristata | Scaffold | 1132.25 | 15124 | BGI | GCA_000690535.1 | 2014[102] | |
Cathartes aura | Scaffold | 1152.57 | 11866 | BGI | GCA_000699945.1 | 2014[102] | |
Chaetura pelagica | Scaffold | 1119.19 | 14343 | BGI | GCA_000747805.1 | 2014[102] | |
Charadrius vociferus | Scaffold | 1219.86 | 14731 | BGI | GCA_000708025.2 | 2014[102] | |
Chlamydotis macqueenii | Scaffold | 1086.57 | 14765 | BGI | GCA_000695195.1 | 2014[102] | |
Ciconia boyciana | Scaffold | 1364.95 | 0 | Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies | GCA_002002965.1 | Submitted 2016[115] | |
Colinus virginianus | Texas | Scaffold | 1254.15 | 17165 | GCA_000599465.2 | ||
Colinus virginianus | Texas | Scaffold | 1042.05 | 0 | GCA_000599485.1 | ||
Colius striatus | Scaffold | 1075.93 | 15009 | BGI | GCA_000690715.1 | 2014[102] | |
Columba livia | Chromosome | 1018.02 | 0 | GCA_001887795.1 | |||
Columba livia | Scaffold | 1107.99 | 26430 | GCA_000337935.1 | |||
Corvus brachyrhynchos | Scaffold | 1091.31 | 19146 | BGI | GCA_000691975.1 | 2014[102] | |
Corvus cornix cornix | Scaffold | 1042.28 | 17215 | GCA_000738735.2 | |||
Corvus cornix cornix | Scaffold | 1050.11 | 0 | GCA_002023255.2 | |||
Coturnix japonica | Chromosome | 927.657 | 20441 | GCA_001577835.1 | |||
Coturnix japonica | L | Scaffold | 898.142 | 0 | GCA_000511605.2 | ||
Cuculus canorus | Scaffold | 1153.89 | 15045 | BGI | GCA_000709325.1 | 2014[102] | |
Egretta garzetta | Scaffold | 1206.5 | 14431 | College of Medicine and Forensics, Xi'an Jiaotong University | GCA_000687185.1 | 2014[116][117] | |
Eurypyga helias | Scaffold | 1088.02 | 14812 | BGI | GCA_000690775.1 | 2014[102] | |
Falco cherrug | Scaffold | 1174.81 | 15380 | BGI | GCA_000337975.1 | 2013[118] | |
Falco peregrinus | Scaffold | 1171.97 | 15567 | GCA_000337955.1 | |||
Falco peregrinus | Chromosome | 1112.06 | 0 | GCA_001887755.1 | |||
Ficedula albicollis | Chromosome | 1118.34 | 16785 | Uppsala University | GCA_000247815.2 | 2012[119] | |
Fulmarus glacialis | Scaffold | 1141.4 | 15228 | BGI | GCA_000690835.1 | 2014[102] | |
Gallirallus okinawae | Contig | 1114.53 | 0 | Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies | GCA_002003005.1 | Submitted 2016[120] | |
Gallus gallus | Chromosome | 1230.26 | 25062 | GCA_000002315.3 | |||
Gallus gallus | Chromosome | 1021.02 | 0 | GCA_002798355.1 | |||
Gavia stellata | Scaffold | 1129.69 | 14770 | BGI | GCA_000690875.1 | 2014[102] | |
Geospiza fortis | Scaffold | 1065.29 | 14568 | Beijing Genomics Institute | GCA_000277835.1 | 2014[102] | |
Grus japonensis | Scaffold | 1265.63 | 0 | Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies | GCA_002002985.1 | Submitted 2016[121] | |
Haliaeetus albicilla | Scaffold | 1133.55 | 15162 | BGI | GCA_000691405.1 | 2014[102] | |
Haliaeetus leucocephalus | Scaffold | 1178.41 | 15817 | The Bald Eagle Consortium
- The Genome Institute - Washington University School of Medicine |
GCA_000737465.1 | Submitted 2014[122] | |
Lepidothrix coronata | Scaffold | 1079.58 | 18695 | McDonnell Genome Institute - Washington University School of Medicine | GCA_001604755.1 | Submitted 2016[123] | |
Leptosomus discolor | Scaffold | 1136.24 | 15300 | BGI | GCA_000691785.1 | 2014[102] | |
Limosa lapponica baueri | Scaffold | 1034.77 | 22862 | Universidade Federal do Rio de Janeiro | GCA_002844005.1 | Submitted 2017[124] | |
Lonchura striata domestica | Scaffold | 1060.17 | 17483 | HHMI/UCSF | GCA_002197715.1 | 2016[125] | |
Lyrurus tetrix tetrix | Contig | 657.025 | 0 | Uppsala University | GCA_000586395.1 | Submitted 2014[126] | |
Manacus vitellinus | Scaffold | 1213.42 | 18472 | GCA_001715985.1 | |||
Manacus vitellinus | Scaffold | 1145.85 | 14312 | GCA_000692015.2 | |||
Meleagris gallopavo | Chromosome | 1128.34 | 26366 | Turkey Genome Consortium
- Virginia Bioinformatics Institute, USA, Blacksburg - Uninversity of Maryland, USA, College Park. - Virginia Tech, Animal and Poultry Sciences |
GCA_000146605.3 | 2010[127] | |
Melopsittacus undulatus | Scaffold | 1117.37 | 14536 | Duke University Genome Center
- The Genome Institute, Washington University at St. Louis |
GCA_000238935.1 | Submitted 2011[128] | |
Merops nubicus | Scaffold | 1062.96 | 14658 | BGI | GCA_000691845.1 | 2014[102] | |
Mesitornis unicolor | Scaffold | 1087.29 | 15719 | BGI | GCA_000695765.1 | 2014[102] | |
Nannopterum auritus | Scaffold | 1246.05 | 0 | UCLA | GCA_002173455.1 | 2017[129] | |
Nannopterum brasilianus | Scaffold | 1346.19 | 0 | UCLA | GCA_002174335.1 | 2017[129] | |
Nannopterum harrisi | Scaffold | 1202.99 | 0 | UCLA | GCA_002173475.1 | 2017[129] | |
Nestor notabilis | Scaffold | 1053.56 | 14860 | BGI | GCA_000696875.1 | 2014[102] | |
Nipponia nippon | Scaffold | 1223.86 | 15343 | College of Medicine and Forensics, Xi'an Jiaotong University | GCA_000708225.1 | 2014[116][117] | |
Numida meleagris | Chromosome | 1043.26 | 21748 | INRA | GCA_002078875.2 | Submitted 2017[130] | |
Opisthocomus hoazin | Scaffold | 1203.71 | 13615 | BGI | GCA_000692075.1 | 2014[102] | |
Parus major | Chromosome | 1020.31 | 18717 | Animal Breeding and Genomics Centre, Wageningen University | GCA_001522545.2 | 2016[131] | |
Passer domesticus | Chromosome | 1042.72 | 0 | Sparrow Genome Consortium
- University of Oslo |
GCA_001700915.1 | Submitted 2016[132] | |
Patagioenas fasciata monilis | Scaffold | 1089.15 | 19528 | University of California, Santa Cruz | GCA_002029285.1 | Submitted 2017[133] | |
Pelecanus crispus | Scaffold | 1160.92 | 15382 | BGI | GCA_000687375.1 | 2014[102] | |
Phaethon lepturus | Scaffold | 1152.96 | 15174 | BGI | GCA_000687285.1 | 2014[102] | |
Phalacrocorax carbo | Scaffold | 1138.97 | 14501 | BGI | GCA_000708925.1 | 2014[102] | |
Phoenicopterus ruber ruber | Scaffold | 1132.18 | 12601 | BGI | GCA_000687265.1 | 2014[102] | |
Phylloscopus plumbeitarsus | Scaffold | 997.399 | 0 | University of British Columbia | GCA_001655115.1 | 2016[134] | |
Phylloscopus trochiloides trochiloides | Scaffold | 975.892 | 0 | University of British Columbia | GCA_001655135.1 | 2016[134] | |
Phylloscopus trochiloides viridanus | Scaffold | 1003.33 | 0 | The University of British Columbia | GCA_001655095.1 | 2014[135] | |
Phylloscopus trochilus acredula | Scaffold | 1066.52 | 0 | Lund University | GCA_002305835.1 | Submitted 2016[136] | |
Picoides pubescens | Scaffold | 1167.32 | 14443 | BGI | GCA_000699005.1 | 2014[102] | |
Podiceps cristatus | Scaffold | 1134.92 | 12155 | BGI | GCA_000699545.1 | 2014[102] | |
Pseudopodoces humilis | Scaffold | 1043 | 16561 | Beijing Genomics Institute (BGI)-Shenzhen | GCA_000331425.1 | 2013[137] | |
Psittacula krameri | Scaffold | 1417.81 | 0 | DICE | GCA_002870145.1 | Submitted 2018[138] | |
Pterocles gutturalis | Scaffold | 1069.32 | 14969 | BGI | GCA_000699245.1 | 2014[102] | |
Pygoscelis adeliae | Scaffold | 1216.62 | 14407 | BGI | GCA_000699105.1 | 2014[102] | |
Saxicola maurus maurus | Scaffold | 1020.37 | 0 | UNIVERSITY OF OXFORD | GCA_900205225.1 | Submitted 2017[139] | |
Serinus canaria | Scaffold | 1152.1 | 17797 | MPI MOLGEN | GCA_000534875.1 | Submitted 2014[140] | |
Setophaga coronata coronata | Scaffold | 1171.93 | 0 | Cornell University | GCA_001746935.1 | 2016[141] | |
Sporophila hypoxantha | Scaffold | 1067.76 | 0 | Cornell University | GCA_002167245.1 | 2017[142] | |
Strix occidentalis caurina | Scaffold | 1255.54 | 0 | California Academy of Sciences | GCA_002372975.1 | 2017[143] | |
Struthio camelus australis | Scaffold | 1225.04 | 16560 | BGI | GCA_000698965.1 | 2014[102] | |
Sturnus vulgaris | Scaffold | 1036.76 | 16813 | Starling Genome Consortium
- McDonnell Genome Institute - Washington University School of Medicine |
GCA_001447265.1 | Submitted 2015[144] | |
Taeniopygia guttata | Chromosome | 1232.14 | 17357 | GCA_000151805.2 | |||
Taeniopygia guttata | Contig | 1982.69 | 0 | GCA_002008985.2 | |||
Tauraco erythrolophus | Scaffold | 1155.54 | 15059 | BGI | GCA_000709365.1 | 2014[102] | |
Tinamus guttatus | Scaffold | 1047.06 | 16739 | BGI | GCA_000705375.2 | 2014[102] | |
Tympanuchus cupido pinnatus | Scaffold | 983.777 | 0 | Revive & Restore Heath Hen De-extinction Team
- The Long Now Foundation |
GCA_001870855.1 | Submitted 2016[145] | |
Tyto alba | Scaffold | 1120.14 | 13995 | BGI | GCA_000687205.1 | 2014[102] | |
Uria lomvia | Scaffold | 1179.36 | 0 | Queen's University | GCA_002289315.1 | 2018[146] | |
Urile pelagicus | Scaffold | 1210.66 | 0 | UCLA | GCA_002173435.1 | 2017[147] | |
Zonotrichia albicollis | Scaffold | 1052.6 | 15943 | GCA_000385455.1 | |||
Zonotrichia albicollis | Scaffold | 1017.28 | 0 | GCA_002850735.1 | |||
Zosterops lateralis melanops | Scaffold | 1036 | 0 | Imperial College London | GCA_001281735.1 | 2015[148] |
Flatworms
Organism name | Strain | Assembly level | Genome size (Mb) | Number of predicted genes | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
Clonorchis sinensis | Henan | Scaffold | 547.288 | 13634 | Sun Yat-sen University | GCA_000236345.1 | 2011[149] |
Dicrocoelium dendriticum | Scaffold | 547.921 | 0 | Wellcome Sanger Institute | GCA_000950715.1 | Submitted 2014[150] | |
Diphyllobothrium latum | Scaffold | 531.434 | 0 | Wellcome Sanger Institute | GCA_000950535.1 | Submitted 2014[151] | |
Dugesia japonica | Scaffold | 854.187 | 0 | Wellcome Sanger Institute | GCA_001938525.1 | Submitted 2016[152] | |
Echinococcus granulosus | Scaffold | 110.838 | 11319 | Chinese National Human Genome Center at Shanghai | GCA_000524195.1 | 2013[153] | |
Echinococcus multilocularis | Scaffold | 114.963 | 9192 | GCA_000469725.3 | |||
Echinostoma caproni | Egypt | Scaffold | 834.556 | 0 | GCA_000950555.1 | ||
Fasciola gigantica | Scaffold | 1273.71 | 0 | GCA_002867515.1 | |||
Fasciola hepatica | Scaffold | 1275.11 | 0 | GCA_000947175.1 | |||
Fasciola hepatica | Scaffold | 1269.31 | 0 | GCA_000824725.2 | |||
Fasciola hepatica | Scaffold | 1138.33 | 14854 | GCA_002763495.1 | |||
Girardia tigrina | Scaffold | 1428.15 | 0 | GCA_001938485.1 | |||
Gyrodactylus salaris | Lier | Scaffold | 67.3807 | 0 | GCA_000715275.1 | ||
Hydatigera taeniaeformis | Scaffold | 103.665 | 0 | GCA_000951575.1 | |||
Hymenolepis diminuta | Scaffold | 165.879 | 0 | Wellcome Sanger Institute | GCA_000951255.1 | Submitted 2014[154] | |
Hymenolepis microstoma | Scaffold | 182.137 | 9409 | Wellcome Sanger Institute | GCA_000469805.2 | 2013[155] | |
Hymenolepis nana | Scaffold | 162.944 | 0 | GCA_000951275.1 | |||
Macrostomum lignano | Scaffold | 764.411 | 49025 | GCA_002269645.1 | |||
Macrostomum lignano | Contig | 1040.12 | 0 | GCA_001188465.1 | |||
Mesocestoides corti | Scaffold | 117.182 | 0 | GCA_000951315.1 | |||
Opisthorchis viverrini | Scaffold | 620.453 | 16356 | GCA_000715545.1 | |||
Opisthorchis viverrini | Scaffold | 472.261 | 10859 | GCA_001990785.1 | |||
Protopolystoma xenopodis | Scaffold | 617.345 | 0 | GCA_000950455.1 | |||
Schistocephalus solidus | NST_G2 | Scaffold | 539.425 | 0 | GCA_000951495.1 | ||
Schistosoma curassoni | Dakar, Senegal | Scaffold | 344.202 | 0 | GCA_000951415.1 | ||
Schistosoma haematobium | Scaffold | 375.894 | 10837 | GCA_000699445.1 | |||
Schistosoma japonicum | Scaffold | 402.743 | 0 | GCA_000151775.1 | |||
Schistosoma mansoni | Puerto Rico | Chromosome | 364.538 | 13258 | GCA_000237925.2 | ||
Schistosoma margrebowiei | Zambia | Scaffold | 367.397 | 0 | GCA_000951435.1 | ||
Schistosoma mattheei | Denwood, Zambia | Scaffold | 340.818 | 0 | GCA_000951455.1 | ||
Schistosoma rodhaini | Burundi | Scaffold | 343.294 | 0 | GCA_000951475.1 | ||
Schmidtea mediterranea | S2 | Scaffold | 942.042 | 0 | GCA_002600895.1 | ||
Schmidtea mediterranea | CIW4 | Scaffold | 779.48 | 0 | GCA_000572305.1 | ||
Schmidtea mediterranea | s2f2 | Scaffold | 700.726 | 0 | GCA_000691995.1 | ||
Schmidtea mediterranea | S2F2 | Contig | 865.587 | 0 | GCA_000181075.1 | ||
Spirometra erinaceieuropaei | Scaffold | 1258.72 | 0 | GCA_000951995.1 | |||
Taenia asiatica | Scaffold | 168.679 | 0 | GCA_001693035.2 | |||
Taenia asiatica | Scaffold | 135.978 | 0 | GCA_000951535.1 | |||
Taenia multiceps | Contig | 240.09 | 0 | GCA_001923025.1 | |||
Taenia saginata | Scaffold | 169.104 | 0 | GCA_001693075.2 | |||
Taenia solium | Scaffold | 129.811 | 0 | GCA_001870725.1 | |||
Taenia solium | Contig | 114.436 | 0 | GCA_002082475.1 | |||
Taenia solium | Contig | 116.38 | 0 | GCA_002221735.1 | |||
Trichobilharzia regenti | Scaffold | 701.762 | 0 | GCA_000950905.1 |
Fishes (123)
Organism name | Strain | Assembly level | Genome size (Mb) | Number of predicted genes | Organization | GenBank assembly identifier | Publication date |
---|---|---|---|---|---|---|---|
1 | |||||||
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