COVID-19 datasets

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COVID-19 datasets are public databases for sharing case data and medical information related to the COVID-19 pandemic.

Aggregate statistics

United States

Volunteer/non-government

Publisher Date of first publication In official use? Update

Frequency

Geographic

Level

Timeseries Testing

Sites

Testing

Number

Cases Hospitalizations Deaths Vaccination

Sites

Vaccination

Number

Description
Coders Against COVID/GISCorps[1] March 22, 2020[2] Yes, by FEMA[3] and State of California[4] Daily Point (lat/long) Yes Yes No No No No Yes No A dataset of COVID-19 testing locations in the United States and Puerto Rico
USAFacts[5] April 24, 2020[6] Yes, by CDC[7] Daily County Yes No No Yes Yes No No A dataset of county-level coronavirus cases and deaths that is updated daily
COVID Tracking Project[8] March 7, 2020[9] No Daily State Yes No Yes Yes Yes Yes No No A volunteer-run database of testing and medical stats in the United States
Sentiment Analysis of users reviews on COVID-19 contact tracing mobile applications[10] [11] March 2021 This dataset is intended to support sentiment analysis of users' reviews on COVID-19 contact tracing mobile applications.

U.S. Department of Health & Human Services

Name Geographic

Level

Timeseries Testing

Sites

Testing

Number

Cases Hospitalizations Deaths Vaccination

Sites

Vaccination

Number

COVID-19 Diagnostic Laboratory Testing (PCR Testing) Time Series Archived 2021-03-12 at the Wayback Machine State Yes No Yes No No No No No
COVID-19 Reported Patient Impact and Hospital Capacity by Facility Archived 2021-03-12 at the Wayback Machine Point (lat/long) Yes No No No Yes No No No
COVID-19 Estimated Patient Impact and Hospital Capacity by State Archived 2021-03-12 at the Wayback Machine State No No No No Yes No No No
COVID-19 Reported Patient Impact and Hospital Capacity by State Archived 2021-03-08 at the Wayback Machine State No No No No Yes No No No
COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries Archived 2021-03-10 at the Wayback Machine State Yes No No No Yes No No No

Global

  • Johns Hopkins Coronavirus Resource Center: Global aggregated data including cases, testing, contact tracing, and vaccine development[12]
  • World Health Organization (WHO) Coronavirus Disease Dashboard: a database of confirmed cases and deaths reported globally and broken down by region.[13] This database is part of the WHO Health Data Platform.[14]
  • COVID-19 Africa Open Data Project: a volunteer-run database and dashboard reporting region, country and district level case counts, deaths, healthcare worker infections, healthcare services and urgent needs.[15]

Data hubs

Topic-specific and special-interest resources

Genomics

Imaging (Radiology)

References

  1. ^ Torpey, Holly; Caballero, M.D., Jorge A. (eds.). "COVID-19 Testing Sites Data". GISCorps/Coders Against COVID Testing Site Data. Retrieved 2020-12-14.
  2. ^ "Volunteer group develops a COVID-19 testing location database for the U.S." TechCrunch. Retrieved 2021-02-03.
  3. ^ "App of the Week: COVID-19 Testing Sites Locator". Federal Emergency Management Agency (FEMA). Retrieved 2021-02-03.
  4. ^ "COVID-19 Testing Sites in California". www.arcgis.com. Retrieved 2021-02-03.
  5. ^ "US Coronavirus Cases and Deaths". USAFacts.org. 2021-02-03. Retrieved 2021-02-03.
  6. ^ "Detailed Methodology and Sources: COVID-19 Data". USAFacts. Retrieved 2021-02-03.
  7. ^ "Coronavirus Outbreak Stats & Data". USAFacts. Retrieved 2021-02-03.
  8. ^ Stephens, Autumn. "Tracking Star in Oakland". Diablo Magazine. Retrieved 2020-09-18.
  9. ^ "About Us". The COVID Tracking Project. Retrieved 2021-02-03.
  10. ^ Ahmad, Kashif (2021). "A Benchmark Dataset for Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Applications". Harvard Dataverse. doi:10.7910/DVN/1RDRCM. Cite journal requires |journal= (help)
  11. ^ Ahmad, Kashif (2021). "Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Apps with a Benchmark Dataset". arXiv:2103.01196 [cs.CL].
  12. ^ "Home". Johns Hopkins Coronavirus Resource Center. Retrieved 2020-09-18.
  13. ^ "WHO Coronavirus Disease (COVID-19) Dashboard". covid19.who.int. Retrieved 2020-09-18.
  14. ^ "World Health Data Platform - WHO". www.who.int. Retrieved 2020-09-18.
  15. ^ "COVID-19 Africa Open Data". Retrieved 16 November 2020.
  16. ^ "Open-Access Data and Computational Resources to Address COVID-19 | Data Science at NIH". datascience.nih.gov. Retrieved 2020-10-13.
  17. ^ "CORD-19 | Semantic Scholar". www.semanticscholar.org. Retrieved 2020-10-13.
  18. ^ "Analysis of COVID-19 publications identifies research gaps". EurekAlert!. Retrieved 2020-10-13.
  19. ^ "Call to Action to the Tech Community on New Machine Readable COVID-19 Dataset". whitehouse.gov. Retrieved 2020-10-13 – via National Archives.
  20. ^ "NLM Leverages Data, Text Mining to Sharpen COVID-19 Research Databases". governmentciomedia.com. Retrieved 2020-10-13.
  21. ^ "GISAID". www.gisaid.org. Retrieved 29 December 2020.
  22. ^ "Nexstrain SARS-CoV-2 Dashboard". nextstrain.org. Retrieved 29 December 2020.
  23. ^ "Nextstrain". docs.nextstrain.org. Retrieved 29 December 2020.
  24. ^ Li Y, Xia L (March 2020). "Coronavirus Disease 2019 (COVID-19): Role of Chest CT in Diagnosis and Management". American Journal of Roentgenology. 214 (6): 1280–1286. doi:10.2214/AJR.20.22954. PMID 32130038. S2CID 212416282.
  25. ^ "COVID-19 related projects". Mila. COVID-19 image data collection. Retrieved 12 July 2020.
  26. ^ "COVID-19 image data collection". GitHub. Retrieved 12 July 2020.
  27. ^ Cohen, Joseph (25 March 2020). "COVID-19 image data collection". arXiv:2003.11597 [eess.IV].
  28. ^ "BIMCV-COVID19, Datasets related to COVID19's pathology course". Medical Imaging Databank in Valencian Region Medical. Retrieved 12 July 2020.
  29. ^ de la Iglesia Vayá, Maria (1 June 2020). "BIMCV COVID-19+: a large annotated dataset of RX and CT images from COVID-19 patients". arXiv:2006.01174 [eess.IV].
  30. ^ "COVID-19 Database". Società Italiana di Radiologia Medica e Interventistica (in Italian). Retrieved 2020-03-11.
  31. ^ "Pneumothorax and pneumomediastinum: a rare complication in the evolution of COVID-19 pneumonia". Eurorad. Retrieved 12 July 2020.
  32. ^ Bell, Daniel; Knipe, Henry. "COVID-19 (summary)". Radiopaedia. Retrieved 12 July 2020.
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